NeuralNetwork/neuralnetwork/neuralnetworkbase/neuralnetwork.go

/*
 * MIT License
 *
 * Copyright (c) 2019 Alexey Edelev <semlanik@gmail.com>
 *
 * This file is part of NeuralNetwork project https://git.semlanik.org/semlanik/NeuralNetwork
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy of this
 * software and associated documentation files (the "Software"), to deal in the Software
 * without restriction, including without limitation the rights to use, copy, modify,
 * merge, publish, distribute, sublicense, and/or sell copies of the Software, and
 * to permit persons to whom the Software is furnished to do so, subject to the following
 * conditions:
 *
 * The above copyright notice and this permission notice shall be included in all copies
 * or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED,
 * INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
 * PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE
 * FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
 * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 * DEALINGS IN THE SOFTWARE.
 */

package neuralnetworkbase

import (
	"encoding/binary"
	"errors"
	"fmt"
	"log"
	"os"

	teach "../teach"
	mat "gonum.org/v1/gonum/mat"
)

// NeuralNetwork is simple neural network implementation
//
// Resources:
// http://neuralnetworksanddeeplearning.com
// https://www.youtube.com/watch?v=fNk_zzaMoSs
//
// Matrix: A
// Description: A is set of calculated neuron activations after sigmoid correction
// Format:    0          l           L
//         ⎡A[0] ⎤ ... ⎡A[0] ⎤ ... ⎡A[0] ⎤
//         ⎢A[1] ⎥ ... ⎢A[1] ⎥ ... ⎢A[1] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎢A[i] ⎥ ... ⎢A[i] ⎥ ... ⎢A[i] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎣A[s] ⎦ ... ⎣A[s] ⎦ ... ⎣A[s] ⎦
// Where s = Sizes[l] - Neural network layer size
//       L = len(Sizes) - Number of neural network layers
//
// Matrix: Z
// Description: Z is set of calculated raw neuron activations
// Format:    0          l           L
//         ⎡Z[0] ⎤ ... ⎡Z[0] ⎤ ... ⎡Z[0] ⎤
//         ⎢Z[1] ⎥ ... ⎢Z[1] ⎥ ... ⎢Z[1] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎢Z[i] ⎥ ... ⎢Z[i] ⎥ ... ⎢Z[i] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎣Z[s] ⎦ ... ⎣Z[s] ⎦ ... ⎣Z[s] ⎦
// Where s = Sizes[l] - Neural network layer size
//       L = len(Sizes) - Number of neural network layers
//
// Matrix: Biases
// Description: Biases is set of biases per layer except l0
//              NOTE: l0 is always empty Dense because first layer
//              doesn't have connections to previous layer
// Format:    1          l           L
//         ⎡b[0] ⎤ ... ⎡b[0] ⎤ ... ⎡b[0] ⎤
//         ⎢b[1] ⎥ ... ⎢b[1] ⎥ ... ⎢b[1] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎢b[i] ⎥ ... ⎢b[i] ⎥ ... ⎢b[i] ⎥
//         ⎢ ... ⎥ ... ⎢ ... ⎥ ... ⎢ ... ⎥
//         ⎣b[s] ⎦ ... ⎣b[s] ⎦ ... ⎣b[s] ⎦
// Where s = Sizes[l] - Neural network layer size
//       L = len(Sizes) - Number of neural network layers
//
// Matrix: Weights
// Description: Weights is set of weights per layer except l0
//              NOTE: l0 is always empty Dense because first layer
//              doesn't have connections to previous layer
// Format:               1                                   l                                   L
//         ⎡w[0,0] ... w[0,j] ... w[0,s']⎤ ... ⎡w[0,0] ... w[0,j] ... w[0,s']⎤ ... ⎡w[0,0] ... w[0,j] ... w[0,s']⎤
//         ⎢w[1,0] ... w[1,j] ... w[1,s']⎥ ... ⎢w[1,0] ... w[1,j] ... w[1,s']⎥ ... ⎢w[1,0] ... w[1,j] ... w[1,s']⎥
//         ⎢              ...            ⎥ ... ⎢              ...            ⎥ ... ⎢              ...            ⎥
//         ⎢w[i,0] ... w[i,j] ... w[i,s']⎥ ... ⎢w[i,0] ... w[i,j] ... w[i,s']⎥ ... ⎢w[i,0] ... w[i,j] ... w[i,s']⎥
//         ⎢              ...            ⎥ ... ⎢              ...            ⎥ ... ⎢              ...            ⎥
//         ⎣w[s,0] ... w[s,j] ... w[s,s']⎦ ... ⎣w[s,0] ... w[s,j] ... w[s,s']⎦ ... ⎣w[s,0] ... w[s,j] ... w[s,s']⎦
// Where s = Sizes[l] - Neural network layer size
//       s' = Sizes[l-1] - Previous neural network layer size
//       L = len(Sizes) - Number of neural network layers

type NeuralNetwork struct {
	Count          int
	Sizes          []int
	Biases         []*mat.Dense
	Weights        []*mat.Dense
	A              []*mat.Dense
	Z              []*mat.Dense
	alpha          float64
	trainingCycles int
}

func NewNeuralNetwork(sizes []int, nu float64, trainingCycles int) (nn *NeuralNetwork, err error) {
	err = nil
	if len(sizes) < 3 {
		fmt.Printf("Invalid network configuration: %v\n", sizes)
		return nil, errors.New("Invalid network configuration: %v\n")
	}

	for i := 0; i < len(sizes); i++ {
		if sizes[i] < 2 {
			fmt.Printf("Invalid network configuration: %v\n", sizes)
			return nil, errors.New("Invalid network configuration: %v\n")
		}
	}

	if nu <= 0.0 || nu > 1.0 {
		fmt.Printf("Invalid η value: %v\n", nu)
		return nil, errors.New("Invalid η value: %v\n")
	}

	if trainingCycles <= 0 {
		fmt.Printf("Invalid training cycles number: %v\n", trainingCycles)
		return nil, errors.New("Invalid training cycles number: %v\n")
	}

	if trainingCycles < 100 {
		fmt.Println("Training cycles number probably is too small")
	}

	nn = &NeuralNetwork{}
	nn.Sizes = sizes
	nn.Count = len(sizes)
	nn.Weights = make([]*mat.Dense, nn.Count)
	nn.Biases = make([]*mat.Dense, nn.Count)
	nn.A = make([]*mat.Dense, nn.Count)
	nn.Z = make([]*mat.Dense, nn.Count)
	nn.alpha = nu / float64(nn.Sizes[0])
	nn.trainingCycles = trainingCycles

	for i := 1; i < nn.Count; i++ {
		nn.Weights[i] = generateRandomDense(nn.Sizes[i], nn.Sizes[i-1])
		nn.Biases[i] = generateRandomDense(nn.Sizes[i], 1)
	}
	return
}

func (nn *NeuralNetwork) Copy() (out *NeuralNetwork) {
	out = &NeuralNetwork{}
	out.Sizes = nn.Sizes
	out.Count = nn.Count
	out.Weights = make([]*mat.Dense, nn.Count)
	out.Biases = make([]*mat.Dense, nn.Count)
	out.A = make([]*mat.Dense, nn.Count)
	out.Z = make([]*mat.Dense, nn.Count)
	out.alpha = nn.alpha
	out.trainingCycles = nn.trainingCycles

	for i := 1; i < out.Count; i++ {
		nn.Weights[i] = mat.DenseCopyOf(out.Weights[i])
		nn.Biases[i] = mat.DenseCopyOf(out.Biases[i])
	}
	return
}

func (nn *NeuralNetwork) Predict(aIn mat.Matrix) (maxIndex int, max float64) {
	r, _ := aIn.Dims()
	if r != nn.Sizes[0] {
		fmt.Printf("Invalid rows number of input matrix size: %v\n", r)
		return -1, 0.0
	}

	nn.forward(aIn)
	result := nn.result()
	r, _ = result.Dims()
	max = 0.0
	maxIndex = 0
	for i := 0; i < r; i++ {
		if result.At(i, 0) > max {
			max = result.At(i, 0)
			maxIndex = i
		}
	}
	return
}

func (nn *NeuralNetwork) Teach(teacher teach.Teacher) {
	for i := 0; i < nn.trainingCycles; i++ {
		for teacher.NextData() {
			nn.backward(teacher.GetData())
		}
	}
}

func check(e error) {
	if e != nil {
		panic(e)
	}
}

func (nn *NeuralNetwork) SaveState(filename string) {
	// Open file for reding
	inputFile, err := os.Create(filename)
	if err != nil {
		log.Fatal(err)
	}

	defer inputFile.Close()

	//save input array count
	bufferSize := make([]byte, 4)
	binary.LittleEndian.PutUint32(bufferSize[0:], uint32(nn.Count))
	n2, err := inputFile.Write(bufferSize)

	check(err)
	fmt.Printf("wrote value %d\n", uint32(nn.Count))

	// save an input array
	buffer := make([]byte, nn.Count*4)
	for i := 0; i < nn.Count; i++ {
		binary.LittleEndian.PutUint32(buffer[i*4:], uint32(nn.Sizes[i]))
	}

	n2, err = inputFile.Write(buffer)
	check(err)
	fmt.Printf("wrote buffer %d bytes\n", n2)

	//save biases
	////////////////////////
	for i := 1; i < nn.Count; i++ {
		saveDense(inputFile, nn.Biases[i])
	}

	//save weights
	////////////////////////
	for i := 1; i < nn.Count; i++ {
		saveDense(inputFile, nn.Weights[i])
	}
}

func saveDense(inputFile *os.File, matrix *mat.Dense) {
	buffer, _ := matrix.MarshalBinary()
	//save int size of Biases buffer
	bufferSize := make([]byte, 4)
	binary.LittleEndian.PutUint32(bufferSize, uint32(len(buffer)))
	inputFile.Write(bufferSize)
	bufferCount, err := inputFile.Write(buffer)
	check(err)
	fmt.Printf("wrote array size %d count of bytes %d \n", len(buffer), bufferCount)
	printMatDense(matrix)
}

func printMatDense(matrix *mat.Dense) {
	// Print the result using the formatter.
	fc := mat.Formatted(matrix, mat.Prefix("    "), mat.Squeeze())
	fmt.Printf("c = %v \n\n", fc)
}

func readDense(inputFile *os.File, matrix *mat.Dense) *mat.Dense {
	count := readInt(inputFile)
	fmt.Printf("%d \n\n", count)
	matrix = &mat.Dense{}
	matrix.UnmarshalBinary(readByteArray(inputFile, count))
	printMatDense(matrix)
	return matrix
}

func readByteArray(inputFile *os.File, size int) []byte {
	// Read an input array
	sizeBuffer := make([]byte, size)
	n1, err := inputFile.Read(sizeBuffer)
	check(err)

	fmt.Printf("readByteArray: size = %d \n", n1)

	return sizeBuffer
}

func readInt(inputFile *os.File) int {
	// Reade int
	count := make([]byte, 4)
	_, err := inputFile.Read(count)
	check(err)

	return int(binary.LittleEndian.Uint32(count))
}

func (nn *NeuralNetwork) LoadState(filename string) {
	inputFile, err := os.Open(filename)
	if err != nil {
		log.Fatal(err)
	}

	defer inputFile.Close()

	// Reade count
	nn.Count = readInt(inputFile)

	// Read an input array
	sizeBuffer := readByteArray(inputFile, nn.Count*4)
	nn.Sizes = make([]int, nn.Count)

	for i := 0; i < nn.Count; i++ {
		nn.Sizes[i] = int(binary.LittleEndian.Uint32(sizeBuffer[i*4:]))
		fmt.Printf("LoadState: nn.Sizes[%d] %d \n", i, nn.Sizes[i])
	}

	nn.Weights = []*mat.Dense{&mat.Dense{}}
	nn.Biases = []*mat.Dense{&mat.Dense{}}

	// read Biases
	nn.Biases[0] = &mat.Dense{}
	for i := 1; i < nn.Count; i++ {
		nn.Biases = append(nn.Biases, &mat.Dense{})
		nn.Biases[i] = readDense(inputFile, nn.Biases[i])
	}

	// read Weights
	nn.Weights[0] = &mat.Dense{}
	for i := 1; i < nn.Count; i++ {
		nn.Weights = append(nn.Weights, &mat.Dense{})
		nn.Weights[i] = readDense(inputFile, nn.Weights[i])
	}
	fmt.Printf("\nLoadState end\n")
}

func (nn *NeuralNetwork) forward(aIn mat.Matrix) {
	nn.A[0] = mat.DenseCopyOf(aIn)

	for i := 1; i < nn.Count; i++ {
		nn.A[i] = mat.NewDense(nn.Sizes[i], 1, nil)
		aSrc := nn.A[i-1]
		aDst := nn.A[i]

		// Each iteration implements formula bellow for neuron activation values
		// A[l]=σ(W[l]*A[l−1]+B[l])

		// W[l]*A[l−1]
		aDst.Mul(nn.Weights[i], aSrc)

		// W[l]*A[l−1]+B[l]
		aDst.Add(aDst, nn.Biases[i])

		// Save raw activation value for back propagation
		nn.Z[i] = mat.DenseCopyOf(aDst)

		// σ(W[l]*A[l−1]+B[l])
		aDst.Apply(applySigmoid, aDst)
	}
}

func (nn *NeuralNetwork) backward(aIn, aOut mat.Matrix) {
	nn.forward(aIn)

	lastLayerNum := nn.Count - 1

	// To calculate new values of weights and biases
	// following formulas are used:
	// W[l] = A[l−1]*δ[l]
	// B[l] = δ[l]

	// For last layer δ value is calculated by following:
	// δ = (A[L]−y)⊙σ'(Z[L])

	// Calculate initial error for last layer L
	// error = A[L]-y
	// Where y is expected activations set
	err := &mat.Dense{}
	err.Sub(nn.result(), aOut)

	// Calculate sigmoids prime σ'(Z[L]) for last layer L
	sigmoidsPrime := &mat.Dense{}
	sigmoidsPrime.Apply(applySigmoidPrime, nn.Z[lastLayerNum])

	// (A[L]−y)⊙σ'(Z[L])
	delta := &mat.Dense{}
	delta.MulElem(err, sigmoidsPrime)

	// B[L] = δ[L]
	biases := mat.DenseCopyOf(delta)

	// W[L] = A[L−1]*δ[L]
	weights := &mat.Dense{}
	weights.Mul(delta, nn.A[lastLayerNum-1].T())

	// Initialize new weights and biases values with last layer values
	newBiases := []*mat.Dense{makeBackGradient(biases, nn.Biases[lastLayerNum], nn.alpha)}
	newWeights := []*mat.Dense{makeBackGradient(weights, nn.Weights[lastLayerNum], nn.alpha)}

	// Save calculated delta value temporary error variable
	err = delta

	// Next layer Weights and Biases are calculated using same formulas:
	// W[l] = A[l−1]*δ[l]
	// B[l] = δ[l]

	// But δ[l] is calculated using different formula:
	// δ[l] = ((Wt[l+1])*δ[l+1])⊙σ'(Z[l])
	// Where Wt[l+1] is transposed matrix of actual Weights from
	// forward step
	for l := nn.Count - 2; l > 0; l-- {
		// Calculate sigmoids prime σ'(Z[l]) for last layer l
		sigmoidsPrime := &mat.Dense{}
		sigmoidsPrime.Apply(applySigmoidPrime, nn.Z[l])

		// (Wt[l+1])*δ[l+1]
		// err bellow is delta from previous step(l+1)
		delta := &mat.Dense{}
		wdelta := &mat.Dense{}
		wdelta.Mul(nn.Weights[l+1].T(), err)

		// Calculate new delta and store it to temporary variable err
		// δ[l] = ((Wt[l+1])*δ[l+1])⊙σ'(Z[l])
		delta.MulElem(wdelta, sigmoidsPrime)
		err = delta

		// B[l] = δ[l]
		biases := mat.DenseCopyOf(delta)

		// W[l] = A[l−1]*δ[l]
		// At this point it's required to give explanation for inaccuracy
		// in the formula

		// Multiplying of activations matrix for layer l-1 and δ[l] is imposible
		// because view of matrices are following:
		//          A[l-1]       δ[l]
		//         ⎡A[0]  ⎤     ⎡δ[0] ⎤
		//         ⎢A[1]  ⎥     ⎢δ[1] ⎥
		//         ⎢ ...  ⎥     ⎢ ... ⎥
		//         ⎢A[i]  ⎥  X  ⎢δ[i] ⎥
		//         ⎢ ...  ⎥     ⎢ ... ⎥
		//         ⎣A[s'] ⎦     ⎣δ[s] ⎦
		// So we need to modify these matrices to apply mutiplications and got
		// Weights matrix of following view:
		//         ⎡w[0,0] ... w[0,j] ... w[0,s']⎤
		//         ⎢w[1,0] ... w[1,j] ... w[1,s']⎥
		//         ⎢              ...            ⎥
		//         ⎢w[i,0] ... w[i,j] ... w[i,s']⎥
		//         ⎢              ...            ⎥
		//         ⎣w[s,0] ... w[s,j] ... w[s,s']⎦
		// So we swap matrices and transpose A[l-1] to get valid multiplication
		// of following view:
		//           δ[l]               A[l-1]
		//         ⎡δ[0] ⎤ x [A[0] A[1] ... A[i] ... A[s']]
		//         ⎢δ[1] ⎥
		//         ⎢ ... ⎥
		//         ⎢δ[i] ⎥
		//         ⎢ ... ⎥
		//         ⎣δ[s] ⎦
		weights := &mat.Dense{}
		weights.Mul(delta, nn.A[l-1].T())

		// !Prepend! new Biases and Weights
		newBiases = append([]*mat.Dense{makeBackGradient(biases, nn.Biases[l], nn.alpha)}, newBiases...)
		newWeights = append([]*mat.Dense{makeBackGradient(weights, nn.Weights[l], nn.alpha)}, newWeights...)
	}

	newBiases = append([]*mat.Dense{&mat.Dense{}}, newBiases...)
	newWeights = append([]*mat.Dense{&mat.Dense{}}, newWeights...)

	nn.Biases = newBiases
	nn.Weights = newWeights
}

func (nn *NeuralNetwork) result() *mat.Dense {
	return nn.A[nn.Count-1]
}

func (nn *NeuralNetwork) TeachResilient(aIn, aOut mat.Matrix, nuP, nuM float64, deltaMin, deltaMax float64) {

}